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Option to make up quality scores #2

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fangly opened this issue Sep 27, 2012 · 1 comment
Open

Option to make up quality scores #2

fangly opened this issue Sep 27, 2012 · 1 comment
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@fangly
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fangly commented Sep 27, 2012

Hi Adam,

It's happened a few times to me that I want to put data through APP for which I have no quality scores.
As far as I know, quality scores are needed for APP. So, maybe it would be good to include an option in app_combine and app_qa to make fake quality scores if the user requests it.

You could ask Dana for her script that does that.

Florent
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fangly commented Oct 2, 2012

Actually, I have rolled up this functionality into MID Adjust (https://sourceforge.net/projects/pyrotaggermid/), which is also useful for Pyrotagger or QIIME. So, I guess it's not so critical to have it in APP anymore.

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