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Issues: Dana-Farber-AIOS/pathml
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Unable to Load IMC data (ome.tiff format) properly. Image data appears 0 only...
bug
Something isn't working
#409
opened Jan 24, 2024 by
Aakanksha-Rana
Compatibility Query: Using PathML for X-Ray Images with Missing 'TotalPixelMatrixRows' Attribute
bug
Something isn't working
#401
opened Dec 13, 2023 by
xinyuejohn
add install instructions for windows
enhancement
New feature or request
#399
opened Dec 12, 2023 by
Dana-Farber
Algorithm for Improved Spectral Unmixing with Reference Image Integration
enhancement
New feature or request
#375
opened Nov 9, 2023 by
sreekarreddydfci
Add Installation and Setup Instructions for Mamba alongside Conda
bug
Something isn't working
#370
opened Oct 23, 2023 by
sreekarreddydfci
Use updated openslide v4.0.0
dependencies
Pull requests that update a dependency file
#368
opened Oct 16, 2023 by
jacob-rosenthal
Unable to read in all image layers in .vdi file, only index 0 is read in
bug
Something isn't working
#364
opened Aug 7, 2023 by
RYY0722
Implement Tile Stitching Feature in Image Preprocessing
enhancement
New feature or request
#363
opened Jul 26, 2023 by
sreekarreddydfci
Make a smaller docker image
enhancement
New feature or request
#357
opened Jun 24, 2023 by
Dana-Farber
Need assistance with running Pathml package via Colab or Docker and resolving errors
#350
opened May 15, 2023 by
DRSEI
necrotic tissue detection for HE and multiplex imaging
enhancement
New feature or request
#345
opened Jan 26, 2023 by
YubinXie
Support GPUs on Docker installation
enhancement
New feature or request
#343
opened Jan 10, 2023 by
Dana-Farber
How to train hovernet starting with semantic-level mask image?
enhancement
New feature or request
#339
opened Dec 1, 2022 by
OmarAshkar
Deepcell segmentation without cytoplasm channel
enhancement
New feature or request
#338
opened Nov 10, 2022 by
jamesMo84
Running preprocessing pipeline on Tiles object
enhancement
New feature or request
#332
opened Oct 14, 2022 by
PaulScemama
Can Pathml support or read in “.TMAP” formatted WSI file?
enhancement
New feature or request
#331
opened Sep 5, 2022 by
liuxiaoping2020
best way to extract anndata ( h5ad ) from hdf5 file
enhancement
New feature or request
#330
opened Sep 2, 2022 by
afshinmoradi
Extend QuantifyMIF to also support brightfield images
enhancement
New feature or request
#318
opened Jun 22, 2022 by
jacob-rosenthal
Rename the default kernel in docker & create intro splash page for 127.0.0.1:8888
documentation
Improvements or additions to documentation
enhancement
New feature or request
#317
opened Jun 21, 2022 by
Dana-Farber
SegmentMIF fails and causes program to hang
bug
Something isn't working
#299
opened Feb 10, 2022 by
surya-narayanan
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