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Drug Response Estimation from single-cell Expression Profiles
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
10x Genomics Linked-Read Diploid De Novo Assembler
A toolset to analyze genomic footprinting data
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
Select the most actively transcribed transcript model using PRO-seq
💬 Command-line translator using Google Translate, Bing Translator, Yandex.Translate, etc.
An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
essHIC is a python module to compare HiC matrices by computing a metric distance between them
ModTect is a tool for identifying sites of RNA modifications that disrupts base-pairing using typical RNA-sequencing datasets
A Git extension for JupyterLab
Methods for summarizing and visualizing multi-biosample functional genomic annotations
Platform for integrating genomic analysis with Jupyter Notebooks.
python module to plot beautiful and highly customizable genome browser tracks
Jupyter notebook based genomic data visualization toolkit.
R Package for 2D and 3D mapping and data visualization
SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations.
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Machine Learning with data from the Multiple Myeloma Research Foundation