Drug Response Estimation from single-cell Expression Profiles

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

10x Genomics Linked-Read Diploid De Novo Assembler

A toolset to analyze genomic footprinting data

Multiple Myeloma Patient Similarity Network

Detecting sites of genomic enrichment

Z shell kernel for Jupyter Notebook

A list of useful bioinformatics resources

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

Select the most actively transcribed transcript model using PRO-seq

NTFS-3G Safe Read/Write NTFS Driver

💬 Command-line translator using Google Translate, Bing Translator, Yandex.Translate, etc.

An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms

essHIC is a python module to compare HiC matrices by computing a metric distance between them

ModTect is a tool for identifying sites of RNA modifications that disrupts base-pairing using typical RNA-sequencing datasets

BigWig and BAM utilities

A Git extension for JupyterLab

Methods for summarizing and visualizing multi-biosample functional genomic annotations

Platform for integrating genomic analysis with Jupyter Notebooks.

python module to plot beautiful and highly customizable genome browser tracks

Jupyter notebook based genomic data visualization toolkit.

R Package for 2D and 3D mapping and data visualization

SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations.

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

Machine Learning with data from the Multiple Myeloma Research Foundation