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@CompEpigen

Computational Cancer Biology and Epigenomics

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  1. methrix methrix Public

    An R 📦 for fast and flexible DNA methylation analysis

    R 28 11

  2. figeno figeno Public

    Tool for plotting sequencing data along genomic coordinates.

    Python 249 8

  3. ChIPseq_workflows ChIPseq_workflows Public

    Workflows for processing of ChIP-seq, ChIPmentation, and Cut&Run data based on the Common Workflow Language

    Common Workflow Language 8 2

  4. ATACseq_workflows ATACseq_workflows Public

    Workflows for processing of ATAC-seq Data based on the Common Workflow Language (CWL)

    Common Workflow Language 4

  5. WGBS_workflows WGBS_workflows Public

    WGBS pipeline based on CWL

    Common Workflow Language 2 1

  6. methylbert methylbert Public

    A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

    Jupyter Notebook 20 3

Repositories

Showing 10 of 53 repositories
  • methylbert Public

    A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

    CompEpigen/methylbert’s past year of commit activity
    Jupyter Notebook 20 MIT 3 2 1 Updated Nov 7, 2024
  • figeno Public

    Tool for plotting sequencing data along genomic coordinates.

    CompEpigen/figeno’s past year of commit activity
    Python 249 GPL-3.0 8 4 0 Updated Nov 5, 2024
  • wgbs_atlas_simulation Public

    Read-level methylome simulation for WGBS normal cell atlas data (https://doi.org/10.1038/s41586-022-05580-6)

    CompEpigen/wgbs_atlas_simulation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2024
  • methylseq_simulation Public

    Read-level methylome simulator

    CompEpigen/methylseq_simulation’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Nov 1, 2024
  • wf_WGS Public

    Nextflow workflow to process WGS data

    CompEpigen/wf_WGS’s past year of commit activity
    Python 3 0 0 0 Updated Oct 31, 2024
  • pyjacker Public

    Enhancer hijacking detection using WGS RNA-seq

    CompEpigen/pyjacker’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 31, 2024
  • epiCHAOS Public
    CompEpigen/epiCHAOS’s past year of commit activity
    R 0 0 0 0 Updated Oct 17, 2024
  • CompEpigen/epiCHAOS-manuscript’s past year of commit activity
    R 1 0 0 0 Updated Oct 2, 2024
  • CompEpigen/cutandrun_SRSF2_Wagner2023’s past year of commit activity
    Python 2 0 0 0 Updated Sep 26, 2024
  • CompEpigen.github.io Public

    CompEpigen IO

    CompEpigen/CompEpigen.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Sep 16, 2024

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