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@BV-BRC-dependencies

Bacterial and Viral Bioinformatics Resource Center

Software repository for dependent tools and third party code for the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) project.

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  1. zou-plasmid-prediction zou-plasmid-prediction Public

    This repository contains all the code to build a machine learning model to differentiate plasmid and chromosome.

    Python

  2. forester forester Public

    Forked from cmzmasek/forester

    forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

    Java

  3. Mash Mash Public

    Forked from marbl/Mash

    Fast genome and metagenome distance estimation using MinHash

    C

  4. Ct-Value-Prediction Ct-Value-Prediction Public

    Forked from lduesterwald/Ct-Value-Prediction

    Python

  5. EColiVariableGeneModels EColiVariableGeneModels Public

    Forked from Tinyman392/EColiVariableGeneModels

    Repository for the E. coli variable PLF models for the corresponding paper. See README for more.

    Python

  6. bwa bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C

Repositories

Showing 10 of 10 repositories
  • solrjs Public Forked from dmachi/solrjs

    Simple NodeJS Solr Client

    BV-BRC-dependencies/solrjs’s past year of commit activity
    JavaScript 0 2 0 0 Updated Oct 14, 2024
  • DiffDock Public Forked from gcorso/DiffDock

    Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

    BV-BRC-dependencies/DiffDock’s past year of commit activity
    Python 0 MIT 265 0 0 Updated Sep 27, 2024
  • Mash Public Forked from marbl/Mash

    Fast genome and metagenome distance estimation using MinHash

    BV-BRC-dependencies/Mash’s past year of commit activity
    C 0 93 0 0 Updated Sep 7, 2023
  • bbmap Public

    BBmap mirror

    BV-BRC-dependencies/bbmap’s past year of commit activity
    0 0 0 0 Updated Feb 6, 2023
  • EColiVariableGeneModels Public Forked from Tinyman392/EColiVariableGeneModels

    Repository for the E. coli variable PLF models for the corresponding paper. See README for more.

    BV-BRC-dependencies/EColiVariableGeneModels’s past year of commit activity
    Python 0 1 0 0 Updated Jan 11, 2023
  • zou-plasmid-prediction Public

    This repository contains all the code to build a machine learning model to differentiate plasmid and chromosome.

    BV-BRC-dependencies/zou-plasmid-prediction’s past year of commit activity
    Python 0 0 0 0 Updated Nov 15, 2022
  • BV-BRC-dependencies/Ct-Value-Prediction’s past year of commit activity
    Python 0 1 0 0 Updated Nov 9, 2022
  • forester Public Forked from cmzmasek/forester

    forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

    BV-BRC-dependencies/forester’s past year of commit activity
    Java 0 15 0 0 Updated Oct 24, 2022
  • bwa Public Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    BV-BRC-dependencies/bwa’s past year of commit activity
    C 0 GPL-3.0 563 0 0 Updated Sep 22, 2022
  • BV-BRC-dependencies/cufflinks’s past year of commit activity
    C 0 BSL-1.0 118 0 0 Updated Mar 31, 2020

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