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Commits on Oct 16, 2023

• Fixing unclassified print

  

  Jennifer Lu

  committed
  68b2f75
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Commits on Sep 27, 2023

• Fixing combine_kreports.py to account for krakenuniq files

  

  Jennifer Lu

  committed
  8e009c2
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• Update README.md

  jenniferlu717

  authored
  81e5e38
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• Merge pull request jenniferlu717#87 from jmboccacino/master

  jenniferlu717

  authored
  0754445
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Commits on Sep 15, 2023

• Update README.md to describe keep/replace spaces in each CLI for kreport2mpa.pyy

  IanVermes

  authored
  7a96852
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• Merge pull request jenniferlu717#2 from jmboccacino/develop

  jmboccacino

  authored
  302457e
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• Merge pull request jenniferlu717#1 from jmboccacino/feature/suggested_changes_to_the_code_2023_09_15

  jmboccacino

  authored
  5b95e0b
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• Changing the way we parse the arguments to do it using mutually exclusivity. This allows the user to either keep or remove the spaces from the taxon names.

  jmboccacino

  committed
  47f2e82
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• Allow user to choose whether they want spaces to be replaced with underlines in taxon names.

  jmboccacino

  committed
  bdf2481
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• In line 157, replaced 'k' with a 'd' for domain/superkingdom level.

  jmboccacino

  committed
  63a64dd
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Commits on Feb 22, 2023

• Merge branch 'master' of https://github.com/jenniferlu717/KrakenTools

  

  Jennifer Lu

  committed
  49b93f1
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• Fixing issue with l_vals in function

  

  Jennifer Lu

  committed
  45015ca
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Commits on Nov 10, 2022

• Update README.md

  nataliarinconv

  authored
  5005f4c
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Commits on Oct 3, 2022

• Modification of README for readability

  

  Jennifer Lu

  committed
  dc95f14
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• Updating README with publication information

  

  Jennifer Lu

  committed
  745e06c
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Commits on Sep 30, 2022

• Fixing compatibility with KrakenUniq output files

  

  Jennifer Lu

  committed
  91325ce
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Commits on Jun 18, 2021

• Fixing issue with krona output

  

  Jennifer Lu

  committed
  1271ae2
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Commits on May 21, 2021

• fishers updated

  

  Natalia Rincon

  committed
  011f3ad
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Commits on Apr 28, 2021

• added simpson's and inverse simpson's alpha diversity index

  

  Natalia Rincon

  committed
  94ddc89
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Commits on Apr 19, 2021

• Update README.md to indicate compatiblity with KrakenUniq reports

  

  Jennifer Lu

  committed
  3788eca
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• Updating combine_kreports.py to be compatible with kraken2uniq/krakenuniq reports

  

  Jennifer Lu

  committed
  50b081e
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• Merge branch 'master' of https://github.com/jenniferlu717/KrakenTools

  

  Jennifer Lu

  committed
  c640d7b
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• Making extract_kraken_reads.py compatible for krakenuniq/kraken2uniq reports

  

  Jennifer Lu

  committed
  23671f6
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Commits on Mar 20, 2021

• Merge pull request jenniferlu717#33 from martin-steinegger/master

  jenniferlu717

  authored
  880254f
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• Fix shebang line

  martin-steinegger

  committed
  ff29ebc
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Commits on Mar 17, 2021

• Fixing make_kreport.py if no unclassified reads

  

  Jennifer Lu

  committed
  fb1fcc4
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Commits on Mar 5, 2021

• Fixing kreport2krona.py level designations

  

  Jennifer Lu

  committed
  b6aeedf
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Commits on Feb 23, 2021

• Fixing kreport2krona to be compatible with krakenuniq reports

  

  Jennifer Lu

  committed
  0d94f83
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Commits on Feb 13, 2021

• [FEATURE] Added beta_diversity script (Bray-Curtis)

  cpockrandt

  committed
  2ac89c7
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Commits on Feb 9, 2021

• Beta diversity script added (bray curtis)

  cpockrandt

  committed
  a8d1b42
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Commits on Jan 29, 2021

• Merge pull request jenniferlu717#31 from pgcudahy/new-exit

  jenniferlu717

  authored
  e412fdf
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Commits on Jan 27, 2021

• Change exit() to sys.exit() and add a check for empty fastq files

  pgcudahy

  committed
  75042e7
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Commits on Oct 28, 2020

• Update README.md

  nataliarinconv

  authored
  0e7a297
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• README edit

  

  Natalia Rincon

  committed
  50fcdf2
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• DiversityTools: alpha_diversity.py added

  

  Natalia Rincon

  committed
  e53911c
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