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Template:Infobox protein family/doc

From Wikipedia, the free encyclopedia

This is template for a protein family/domain as defined in biological databases such as Pfam.

Usage

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To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing.

{{Infobox protein family
| class = <!-- to save space: mw-collapsible mw-collapsed -->
| Symbol = 
| Name = 
| image = 
| caption = 
| Pfam = 
| Pfam_clan = 
| ECOD =
| InterPro = 
| SMART = 
| PROSITE = 
| MEROPS =
| CATH =
| SCOP = 
| TCDB = 
| OPM family = <!-- actually the OPM superfamily. Write ONLY WHEN the protein family has an exact "superfamily" match! -->
| OPM protein = 
| CAZy = 
| CDD =
| Membranome superfamily = <!-- same as above: only when exact match. -->
| Membranome family =
}}

Examples

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The following filled in Pfam infobox template produces the information box to the right.

Ligand-binding domain (LBD)
RORγ (PDB: 3L0L​)
Identifiers
SymbolHormone_recep
PfamPF00104
ECOD188.1.1.1
InterProIPR000536
SMARTSM00430
CATH1lbd
SCOP21lbd / SCOPe / SUPFAM
CDDcd06157
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
{{Infobox protein family
| Symbol = Hormone_recep
| class = collapsible
| Name = Ligand-binding domain (LBD)
| image = RORC_3L0L.png
| caption = [[RAR-related orphan receptor gamma|RORγ]] ({{PDB|3L0L}})
| Pfam = PF00104
| ECOD = 188.1.1.1
| InterPro = IPR000536
| SMART = SM00430
| PROSITE = 
| SCOP = 1lbd
| CATH = 1lbd
| TCDB =
| OPM family =
| OPM protein =
| CDD = cd06157
}}

Maintenance

[edit]

TemplateData

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This is the TemplateData for this template used by TemplateWizard, VisualEditor and other tools. See a monthly parameter usage report for Template:Infobox protein family in articles based on its TemplateData.

TemplateData for Infobox protein family

This is template for a protein family/domain as defined in biological databases such as Pfam.

Template parameters

ParameterDescriptionTypeStatus
SymbolSymbol

no description

Lineoptional
NameName

no description

Lineoptional
Imageimage

fill in "NONE" if not needed to suppress the tracking category

Fileoptional
Widthwidth

Width for image

Stringoptional
Captioncaption

Caption for image

Stringoptional
InterPro family identifierInterPro

no description

Unknownoptional
Pfam family identifierPfam

Auto-links to Pfam family record

Lineoptional
Pfam clan identifierPfam_clan

Auto-links to Pfam clan record; a clan is a group of related families (~superfamily).

Lineoptional
ECOD identifierECOD

Auto-links to the ECOD database

Lineoptional
Interpro identifierInterpro

Auto-links to an Interpro entry

Lineoptional
SMART accession numberSMART

Auto-links to a domain entry in the Simple Modular Architecture Research Tool

Lineoptional
PROSITE record identifierPROSITE

Auto-links to a PROSITE record search

Lineoptional
MEROPS record identifierMEROPS

Auto-links to a MEROPS record (MEROPS is scoped to peptidases and their inhibitors)

Lineoptional
SCOP (domain/PDB accession number)SCOP

Given a PDB accession number or SCOP domain name, auto-links to a SCOP and a SUPFAMpage.

Lineoptional
SCOP2 overrideSCOP2

SCOP and SCOP2 use different domain nomenclature. Use this value if a domain is specified for SCOP.

Example
8029676
Unknownoptional
CATH (domain/PDB accession number)CATH

Given a CATH domain ID or a PDB accession number, auto-links to CATH (Classification of Protein Structural Domains).

Lineoptional
TCDB identifierTCDB

Auto-links to an identifier search in the Transporter Classification Database

Lineoptional
OPM superfamily identifierOPM family

Auto-links to a superfamily record in the database of Orientations of Proteins in Membranes.

Lineoptional
OPM protein identifierOPM protein

Value will typically be a PDB identifier; auto-links to a protein record in the database of Orientations of Proteins in Membranes

Lineoptional
CAZy family identifierCAZy

Auto-links to a family description page in the database of Carbohydrate-Active enZYmes.

Lineoptional
CDD uidCDD

Auto-links to a record in the Conserved Domain Database

Lineoptional
alignalign

no description

Unknownoptional
image_sizeimage_size

no description

Unknownoptional
altalt

no description

Unknownoptional
Membranome superfamilyMembranome superfamily

no description

Unknownoptional
Membranome familyMembranome family

no description

Unknownoptional
classclass

infobox class

Example
mw-collapsible mw-collapsed
Unknownoptional
belowbelow

footnotes

Unknownoptional
PDBPDB

PDB examples. Only use if all of: no image is available, no CATH/SCOP examples, InterPro or PDB search fails.

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