HaeIII

Type-2 restriction enzyme HaeIII
The crystal structure of HaeIII enzyme convalently complexed to DNA: an extrahelical cytosine and rearranged base pairing.
Identifiers
Organism	Haemophilus aegyptius
Symbol	haeIIIR
RefSeq (Prot)	WP_006996034.1
UniProt	O68584
Other data
EC number	3.1.21.4
Chromosome	Genomic: 0.7 - 0.7 Mb
Search for Structures Swiss-model Domains InterPro

HaeIIIR
Identifiers
Symbol	RE_HaeIII
Pfam	PF09556
InterPro	IPR019059
Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

HaeIII is one of many restriction enzymes (endonucleases) a type of prokaryotic DNA that protects organisms from unknown, foreign DNA. It is a restriction enzyme used in molecular biology laboratories. It was the third endonuclease to be isolated from the Haemophilus aegyptius bacteria. The enzyme's recognition site—the place where it cuts DNA molecules—is the GGCC nucleotide sequence which means it cleaves DNA at the site 5′-GG/CC-3. The recognition site is usually around 4-8 bps.This enzyme's gene has been sequenced and cloned. This is done to make DNA fragments in blunt ends. HaeIII is not effective for single stranded DNA cleavage.

Properties

HaeIII has a molecular weight of 37126. After a 2-10-fold of HaeIII takes place, there is overdigestion of a DNA substrate. This results in 100% being cut, more than 50% of fragments being ligated, and more than 95% being recut. Heat inactivation comes at about 80 °C for 20 minutes. The locus of the HaeIII enzyme is on AF05137, and is linear with 957 base pairs.

History

HaeIII along with other restriction enzymes were discovered in 1970 by Werner Arber and Matthew Meselson. The HaeIII methyltransferase also known as MTase gene from Haemophilus aegyptius (recognition sequence: 5′-GGCC-3′) was made into Escherichia coli (E.coli) in the plasmid vector pBR322. The gene was extracted from a single EcoRI fragment and a single HindIII enzyme fragment. Clones carrying additional adjacent fragments were found to code for the HaeIII restriction enzyme.

Function

The enzyme cleaves the DNA at the positions where the GGCC sequence is found. The cleavage occurs between the second and the third nucleotides (G and C). The resulting DNA fragments are known as restriction fragments. HaeIII cuts both strands of DNA in the same location, yielding restriction fragments with blunt ends. Heat denaturation occurs at 80°C after 20 minutes.

Methylase

Haemophilus aegyptius also carries a methylase dubbed HaeIIIM (P20589) that methylates the internal cytosines in the GGCC sequence. It protects sequences from being cut by HaeIII, and forms a restriction modification system. HaeIII enzyme comes from an E. coli strain that carries the cloned HaeIII modification gene from Haemophilus aegyptius.

Further reading

• Rawn JD (1989). Biochemistry (International ed.). ISBN 0-89278-405-9.
• Slatko BE, Croft R, Moran LS, Wilson GG (December 1988). "Cloning and analysis of the HaeIII and HaeII methyltransferase genes". Gene. 74 (1): 45–50. doi:10.1016/0378-1119(88)90248-x. PMID 3248732.
• Blakesley RW, Dodgson JB, Nes IF, Wells RD (October 1977). "Duplex regions in "single-stranded" phiX174 DNA are cleaved by a restriction endonuclease from Haemophilus aegyptius". The Journal of Biological Chemistry. 252 (20): 7300–6. doi:10.1016/S0021-9258(19)66969-3. PMID 71298.
• Hoffman JL (July 1986). "Chromatographic analysis of the chiral and covalent instability of S-adenosyl-L-methionine". Biochemistry. 25 (15): 4444–9. doi:10.1021/bi00363a041. PMID 3530324.