Cloud Usage Guides

In this section we present several step-by-step guides to running NVIDIA Parabricks on several cloud platforms.

• Benchmarking Whole Genome and Whole Exome Data from Complete Genomics using Parabricks on AWS
  
  • Pre-Requisites
  • Dataset
  • Running the Benchmarks
  • Final Runtimes and Cost Analysis
  • Concordance with the Truth Set
  • Conclusion
• Running NVIDIA Parabricks on AWS
  
  • What is NVIDIA Parabricks?
  • Starting an EC2 Instance
  • Installing Parabricks
  • Testing Parabricks
  • Private Workflows
  • Closing Remarks
• Running NVIDIA Parabricks on Azure
  
  • What is NVIDIA Parabricks?
  • Starting a Compute Instance
  • Installing Parabricks
  • Testing Parabricks
  • Closing Remarks
• Running NVIDIA Parabricks on DNAnexus
  
  • What is NVIDIA Parabricks?
  • Finding the Parabricks tools on DNAnexus
  • Running the Parabricks FQ-to-BAM Pipeline using the GUI
  • Running the Parabricks FQ-to-BAM Pipeline using the CLI
• Running NVIDIA Parabricks on GCP
  
  • What is NVIDIA Parabricks?
  • Starting a Compute Instance
  • Installing Parabricks
  • Testing Parabricks
  • Closing Remarks
• Running NVIDIA Parabricks on nf-core
  
  • What is NVIDIA Parabricks?
  • Finding the Parabricks modules on nf-core
  • Running the Parabricks modules on nf-core
• Running NVIDIA Parabricks on OCI
  
  • What is NVIDIA Parabricks?
  • Starting a GPU Instance for Parabricks Installation
  • Sign into the GPU instance to install and test Parabricks
  • Download and Install Parabricks
  • Closing Remarks
• Running NVIDIA Parabricks on Terra
  
  • What is NVIDIA Parabricks?
  • Running fq2bam on Terra