Hail Discussion

Topic	Replies	Views	Activity
I cannot access the VEP, Annotation DB, or Datasets API buckets Hail Query & hailctl Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…	1	347	February 28, 2024
Welcome to the Hail community! Updates	0	4022	August 26, 2016
PRS calculation using hail matrix Hail Query & hailctl	0	1	September 13, 2024
Computation speed of hail aggregation Hail Query & hailctl	11	586	September 11, 2024
Working with large VCFs (e.g. from UK Biobank) is slow Hail Query & hailctl	12	1628	August 23, 2024
Using HDFS on EMR Hail Query & hailctl	3	26	August 23, 2024
Extracing sample IDs into a Python List Hail Query & hailctl	0	15	August 8, 2024
Filtering samples from VDS in Google cloud Hail Batch & General Cloud	11	427	August 6, 2024
Hail installation fail at No rule to make target `jni.h' even after setting JAVA_HOME Hail Query & hailctl	0	8	August 1, 2024
How to recode config in a matrix table Hail Query & hailctl	0	15	July 29, 2024
AssertionError: assertion failed Hail Batch & General Cloud	2	226	July 26, 2024
Cannot Get Sequence Information Hail Query & hailctl	0	20	July 26, 2024
Submit script giving ModuleNotFoundError: No module named ‘gnomad’ Hail Query & hailctl	4	22	July 16, 2024
How to deploy the latest Hail 0.2 on AWS EMR? Hail Query & hailctl	3	394	July 11, 2024
Illegal reflective access Hail Query & hailctl	0	28	July 9, 2024
Annotating VCF from gnomad VCF and merge join tables in general Hail Query & hailctl	3	80	July 9, 2024
MethodTooLargeException when running vds.combiner Hail Query & hailctl	2	66	June 30, 2024
No FileSystem for scheme "gs" Hail Batch & General Cloud	2	217	June 21, 2024
Duplicated Loci error on VDS Combiner Hail Query & hailctl	3	65	June 20, 2024
Pre-VEPed reference table Hail Query & hailctl	0	46	June 18, 2024
Request for Feedback on Hail-Adjacent System Science	2	79	June 17, 2024
Export_vcf very slow Hail Query & hailctl	0	58	June 16, 2024
Pc_rel memory issue: ConnectionRefusedError: [Errno 111] Connection refused Hail Query & hailctl	10	420	June 11, 2024
LineTooLong Error after union_rows Hail Query & hailctl	0	63	June 7, 2024
Accessing intervals and alleles in matrix table Hail Query & hailctl	3	94	June 5, 2024
Trying to recode output from imputed_sex to 0 or 1 Hail Query & hailctl	3	66	May 31, 2024
Isolating Split Variants from VDS Hail Query & hailctl	0	71	May 24, 2024
Shortening MT writing / export_vcf in Variant QC Hail Query & hailctl	0	85	May 23, 2024
Hail fails after installing it on a single computer Hail Query & hailctl	6	334	May 23, 2024
Error in load_dataset() Hail Query & hailctl	6	180	May 23, 2024