Report forwarded
to debian-bugs-dist@lists.debian.org, reproducible-bugs@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>: Bug#920591; Package src:lambda-align2.
(Sun, 27 Jan 2019 09:03:07 GMT) (full text, mbox, link).
Acknowledgement sent
to Chris Lamb <lamby@debian.org>:
New Bug report received and forwarded. Copy sent to reproducible-bugs@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>.
(Sun, 27 Jan 2019 09:03:07 GMT) (full text, mbox, link).
Source: lambda-align2
Version: 2.0.0-4
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: environment
X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed
that lambda-align2 could not be built reproducibly.
This is because the manpages embed the build-time number of CPUs. For example:
-number of threads to run concurrently (ignored if a == skew7ext). In range [1..160]. Default: \fI16\fP.
+number of threads to run concurrently (ignored if a == skew7ext). In range [1..150]. Default: \fI15\fP.
Patch attached.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby@debian.org / chris-lamb.co.uk
`-
Subject: Bug#920591: fixed in lambda-align2 2.0.0-5
Date: Sun, 27 Jan 2019 10:49:28 +0000
Source: lambda-align2
Source-Version: 2.0.0-5
We believe that the bug you reported is fixed in the latest version of
lambda-align2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 920591@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated lambda-align2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
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Hash: SHA256
Format: 1.8
Date: Sun, 27 Jan 2019 11:18:13 +0100
Source: lambda-align2
Binary: lambda-align2
Architecture: source
Version: 2.0.0-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
lambda-align2 - Local Aligner for Massive Biological DatA - v2
Closes: 920591
Changes:
lambda-align2 (2.0.0-5) unstable; urgency=medium
.
* Team upload.
* make the build reproducible (thanks for the patch to
Chris Lamb <lamby@debian.org>)
Closes: #920591
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Bug archived.
Request was from Debbugs Internal Request <owner@bugs.debian.org>
to internal_control@bugs.debian.org.
(Tue, 26 Feb 2019 07:31:51 GMT) (full text, mbox, link).
Bug unarchived.
Request was from "Chris Lamb" <lamby@debian.org>
to control@bugs.debian.org.
(Thu, 30 May 2019 09:54:03 GMT) (full text, mbox, link).
Information forwarded
to debian-bugs-dist@lists.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>: Bug#920591; Package src:lambda-align2.
(Thu, 30 May 2019 10:09:02 GMT) (full text, mbox, link).
Acknowledgement sent
to "Chris Lamb" <lamby@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>.
(Thu, 30 May 2019 10:09:02 GMT) (full text, mbox, link).
found 920591 2.0.0-5
tags 920591 - patch
thanks
> […]
Unfortunately the package remains unreproducible; I think this patch
was incomplete or is incorrect. (See attached.)
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby@debian.org / chris-lamb.co.uk
`-
Marked as found in versions lambda-align2/2.0.0-5; no longer marked as fixed in versions lambda-align2/2.0.0-5 and reopened.
Request was from "Chris Lamb" <lamby@debian.org>
to control@bugs.debian.org.
(Thu, 30 May 2019 10:09:04 GMT) (full text, mbox, link).
Removed tag(s) patch.
Request was from "Chris Lamb" <lamby@debian.org>
to control@bugs.debian.org.
(Thu, 30 May 2019 10:09:04 GMT) (full text, mbox, link).
Reply sent
to Sascha Steinbiss <satta@debian.org>:
You have taken responsibility.
(Sat, 08 Jun 2019 13:21:05 GMT) (full text, mbox, link).
Notification sent
to Chris Lamb <lamby@debian.org>:
Bug acknowledged by developer.
(Sat, 08 Jun 2019 13:21:05 GMT) (full text, mbox, link).
Subject: Bug#920591: fixed in lambda-align2 2.0.0-6
Date: Sat, 08 Jun 2019 13:18:27 +0000
Source: lambda-align2
Source-Version: 2.0.0-6
We believe that the bug you reported is fixed in the latest version of
lambda-align2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 920591@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <satta@debian.org> (supplier of updated lambda-align2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 08 Jun 2019 14:49:26 +0200
Source: lambda-align2
Architecture: source
Version: 2.0.0-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Closes: 920591
Changes:
lambda-align2 (2.0.0-6) unstable; urgency=medium
.
* Adjust reproducibility patch.
Closes: #920591
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Bug archived.
Request was from Debbugs Internal Request <owner@bugs.debian.org>
to internal_control@bugs.debian.org.
(Mon, 08 Jul 2019 07:33:43 GMT) (full text, mbox, link).
Debbugs is free software and licensed under the terms of the GNU General
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