891529">

Debian Bug report logs - #891529
acedb FTBFS with flex 2.6.4-6

version graph

Package: src:acedb; Maintainer for src:acedb is Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>;

Reported by: Adrian Bunk <bunk@debian.org>

Date: Mon, 26 Feb 2018 12:57:01 UTC

Severity: serious

Tags: patch

Found in version acedb/4.9.39+dfsg.02-2

Fixed in version acedb/4.9.39+dfsg.02-3

Done: Andreas Tille <tille@debian.org>

Bug is archived. No further changes may be made.

View this report as an mbox folder, status mbox, maintainer mbox


Report forwarded to debian-bugs-dist@lists.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>:
Bug#891529; Package src:acedb. (Mon, 26 Feb 2018 12:57:04 GMT) (full text, mbox, link).


Acknowledgement sent to Adrian Bunk <bunk@debian.org>:
New Bug report received and forwarded. Copy sent to Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>. (Mon, 26 Feb 2018 12:57:04 GMT) (full text, mbox, link).


Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Adrian Bunk <bunk@debian.org>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: acedb FTBFS with flex 2.6.4-6
Date: Mon, 26 Feb 2018 14:56:21 +0200
[Message part 1 (text/plain, inline)]
Source: acedb
Version: 4.9.39+dfsg.02-2
Severity: serious
Tags: patch

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/acedb.html

...
gcc -g -Wl,-z,relro -Wl,-z,now -o metacheck metadata.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl 
./libfree.a(filsubs.o): In function `filTmpOpenWithSuffix':
acedb_4.9.39+dfsg.02-2/bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp'
/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/libfl.so: undefined reference to `yylex'
collect2: error: ld returned 1 exit status
make[3]: *** [makefile:1271: metacheck] Error 1


Fix attached.
[libfl.patch (text/plain, attachment)]

Reply sent to Andreas Tille <tille@debian.org>:
You have taken responsibility. (Wed, 28 Feb 2018 10:36:06 GMT) (full text, mbox, link).


Notification sent to Adrian Bunk <bunk@debian.org>:
Bug acknowledged by developer. (Wed, 28 Feb 2018 10:36:06 GMT) (full text, mbox, link).


Message #10 received at 891529-close@bugs.debian.org (full text, mbox, reply):

From: Andreas Tille <tille@debian.org>
To: 891529-close@bugs.debian.org
Subject: Bug#891529: fixed in acedb 4.9.39+dfsg.02-3
Date: Wed, 28 Feb 2018 10:34:26 +0000
Source: acedb
Source-Version: 4.9.39+dfsg.02-3

We believe that the bug you reported is fixed in the latest version of
acedb, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 891529@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated acedb package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 28 Feb 2018 11:11:58 +0100
Source: acedb
Binary: acedb-other-dotter acedb-other-belvu acedb-other
Architecture: source
Version: 4.9.39+dfsg.02-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 acedb-other - retrieval of DNA or protein sequences
 acedb-other-belvu - transitional package for belvu
 acedb-other-dotter - transitional package for dotter
Closes: 891529
Changes:
 acedb (4.9.39+dfsg.02-3) unstable; urgency=medium
 .
   [ Adrian Bunk ]
   * Fix with shared libfl needless linking
     Closes: #891529
 .
   [ Andreas Tille ]
   * Standards-Version: 4.1.3
   * Do not create empty directories
   * Drop outdated text from README.Debian
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 c86c0df440ca96e05a55cd224199bc638286b0c2 13440 acedb_4.9.39+dfsg.02-3.debian.tar.xz
Checksums-Sha256:
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Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Thu, 29 Mar 2018 07:26:33 GMT) (full text, mbox, link).


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