Report forwarded
to debian-bugs-dist@lists.debian.org, reproducible-builds@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>: Bug#818431; Package src:seqprep.
(Wed, 16 Mar 2016 23:48:05 GMT) (full text, mbox, link).
Acknowledgement sent
to Dhole <dhole@openmailbox.org>:
New Bug report received and forwarded. Copy sent to reproducible-builds@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>.
(Wed, 16 Mar 2016 23:48:05 GMT) (full text, mbox, link).
Source: seqprep
Version: 1.1-4
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: locale
X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org
Hi,
While working on the "reproducible builds" effort [1], we have noticed
that seqprep could not be built reproducibly.
When generating the manpages, ronn uses the local timezone in the
embedded timestamps.
The attached patch fixes this by setting the timezone to UTC before
calling ronn. Once applied, seqprep can be built reproducibly in our
current experimental framework.
[1]: https://wiki.debian.org/ReproducibleBuilds
Regards,
--
Dhole
Source: seqprep
Source-Version: 1.1-5
We believe that the bug you reported is fixed in the latest version of
seqprep, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 818431@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated seqprep package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 17 Mar 2016 08:40:56 +0100
Source: seqprep
Binary: seqprep seqprep-data
Architecture: source
Version: 1.1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
seqprep - stripping adaptors and/or merging paired reads of DNA sequences w
seqprep-data - example data set for seqprep - only used for testing
Closes: 818431
Changes:
seqprep (1.1-5) unstable; urgency=medium
.
* Fix timezone to UTC when building manpages to get reproducible embedded
dates. (Thanks for the patch to Dhole <dhole@openmailbox.org>)
Closes: #818431
* cme fix dpkg-control
* Better hardening
* Suppress lintian warning about verbose copies of gz files
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Bug archived.
Request was from Debbugs Internal Request <owner@bugs.debian.org>
to internal_control@bugs.debian.org.
(Mon, 25 Apr 2016 07:30:17 GMT) (full text, mbox, link).
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