AWS HealthOmics resources
Documentation
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User Guide
Learn how to use AWS HealthOmics in this step-by-step developer guide.
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API Reference
Read this reference guide for AWS HealthOmics APIs and parameters.
Tools and Tutorials
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Open Source Tools for AWS HealthOmics
Open source repository on Github with tools for working with AWS HealthOmics.
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Open Source Tutorials for AWS HealthOmics
Open source repository on Github with example code that demonstrates how to store, process, and query genomic and biological datasets using AWS HealthOmics.
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WDL Linter for AWS HealthOmics
Container image hosted in Amazon ECR public repositories that provides general linting and specific recommendations for WDL workflow definitions for use with AWS HealthOmics.
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Amazon ECR Helper for AWS HealthOmics
Open source CDK application that automates migrating container images for use with AWS HealthOmics Workflows.
Solutions
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Guidance for Migration & Storage of Sequence Data with AWS HealthOmics
This Guidance demonstrates how to import omics sequence data from Amazon Simple Storage Service (Amazon S3) into AWS HealthOmics Storage.
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Guidance for Multi-Modal Data Analysis with AWS Health and ML Services
This Guidance demonstrates how to set up an end-to-end framework to analyze multimodal healthcare and life sciences (HCLS) data.
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Guidance for Bioinformatics Workflows on AWS
This Guidance shows how you can build and run production-grade bioinformatics workflows at scale and use AWS services for automation, workflow analysis, storage, and operational and cost observability.
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Guidance for Bioinformatics Workflow Development Using DevOps on AWS
This Guidance demonstrates how to set up a continuous integration and continuous delivery (CI/CD) pipeline to automate the lifecycle of your bioinformatics workflows on AWS HealthOmics.
What's New
AWS HealthOmics now supports DSL and Nextflow version detection
08/13/24
AWS HealthOmics now supports dynamic run storage for private workflows
04/30/24
AWS HealthOmics now supports cross-account sharing for private workflows
04/30/24
AWS HealthOmics announces support for reading sequence stores through Amazon S3 APIs
04/15/24
AWS HealthOmics now provides additional information for workflow runs
02/23/24
AWS HealthOmics now supports Ultima Genomics DeepVariant Ready2Run workflow
02/05/24
AWS HealthOmics sequence store now includes auto-calculated ETags for read sets
10/06/23
AWS HealthOmics is now available in Israel (Tel Aviv) Region
09/26/23
AWS HealthOmics now provides workflow run archiving and retention
08/30/23
AWS HealthOmics now supports versioning of annotation stores
08/15/23
AWS HealthOmics supports cross-account sharing of omics analytics stores
08/15/23
Blog posts
Orchestrating Multiple AWS HealthOmics Workflows at Scale
05/07/24
Store omics data cost effectively at any scale with AWS HealthOmics
01/24/24
fMRI Data Preprocessing on AWS using AFNI and AWS HealthOmics
01/08/24
New Tools to Accelerate Workflow Migrations to AWS HealthOmics
12/13/23
Multimodal Data Analysis with AWS Health and Machine Learning Services
10/16/23
Secure Your Genomic Workflows and Data with AWS HealthOmics
10/09/23
AWS HealthOmics now supports Sentieon genomic analysis pipelines
05/15/23
Element Biosciences offers Bases2FASTQ as a Ready2Run workflow on AWS HealthOmics
05/15/23
Easily run NVIDIA Parabricks Ready2Run workflows on AWS HealthOmics
05/15/23
Part 2: Automated End-to-End Genomics Data Storage and Analysis using AWS HealthOmics
11/29/22
Part 1: Introducing AWS HealthOmics—from sequence data to insights, securely and at scale
11/29/22
Videos
AWS re:Invent 2023 - Omics innovation with AWS HealthOmics: Amgen’s path to faster results
AWS re:Invent 2023 - Building a precision medicine platform using AWS HealthOmics
AWS HealthOmics End to End Workshop - Presentation (43:27)
AWS On Air ft. AWS HealthOmics & Open Data (20:07)
Using AWS HealthOmics for Genomics End-to-End (2:03:06)
AWS On Air ft. Ready2Run Workflows on AWS HealthOmics (26:34)
A fast walk through AWS HealthOmics (12:47)
Integrate and derive insights from multi-modal health data (44:37)
Transform omics data into insights with AWS HealthOmics (38:56)