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Most of the pre-war things stayed how it was originally planned. I did intend for Loki to keep coming until Jo left with Howard and because of the distance thing with the necklace I probably didn't convey enough he would have spent a lot of time looking for her until Peggy told him Jo died. However when I got down to the grits of it I realize if Loki hadn't explicitly said he wasn't coming back for her Jo would have never started to imagine something more with Bucky. Which means she likely wouldn't have gone to Azzano or after his body when he fell from the train. She'd have been real sad for Steve but...
Pretty much all of the Russia/Hydra/Winter Soldier bit was the same. I had planned on putting in a bit that Jo would ingratiate herself into hydra more willingly so she could have access to shit and then she was going to leak hydra information to Shield (which is why she actually got put into permanent cryo) hoping someone would figure out it was her and come save them. And then when she got out and Steve was like 'come see your sister!' She would have been like....nope, she knew it was me and left me there to die.
The big thing that changed, because it felt disingenuous, was after Cap 2 when Jo was living in New York she was going to have her own apartment and kind of try and live a normal life(which meant she likely wouldn't have developed any relationship with Thor or Tony) and when Loki dropped Odin at Shady Acres out of habit he was going to send a pulse out looking for her necklace and they were going to meet up and have a few years together. BUUUUUT it would have been like before because Loki could only come to see her occasionally as he was pretending to be Odin which also meant he couldn't just take her to Asgard and be like hey this is my girlfriend. After mulling that one over she had spent all that time trying to get Bucky free she wouldn't just walk away and I think if Loki had chance he wouldn't have left her again.
Last big change is Loki was never supposed to come back to the story post Infinity war. He would have died on the ship and Jo was going to go with Clint and Pietro before branching off on her own.
but...I saw people really wanted a reunion and I changed some things.
Before my re-write and Jo leaving New York near the end I had originally planned for Steve to stay pissed at her even after he came to see her at her new place. She was going to start the prosthetics company and have that normal, happy life she never thought she would get. She was going to have a daughter WITH Loki (still named Astrid) and then when the time came the rest of the story would pretty much play out the same. There would have been a line about her saving Tony because no more kids needed to lose their dads that day yada yada. Cut to about six months or so later, her, Astrid and Bucky are having a picnic somewhere and Astrid is like 'dada' or some baby thing and Jo would turn around to see Loki walking out of a TVA portal toward them. And we can assume they lived in a happy weird little throuple.
Also another thread I absolutely failed to continue.....the scarf Jo gave Loki their first Christmas was the one he wore when he walked into the museum in Avengers 1. lol