Package: SINCERA

Type: Package

Title: An R implementation of SINCERA pipeline for processing

single-cell RNA-seq data.

Version: 0.99.0

Date: 2018-08-22

Authors@R: person("Minzhe", "Guo", email = "[email protected]", role = c("aut", "cre"))

Depends: R (>= 3.2.0), Biobase, ROCR, RobustRankAggreg, Rtsne, tsne, RColorBrewer, gridExtra, dplyr,

G1DBN, igraph, ggplot2, ggdendro, plyr, zoo, reshape2, gmodels, cluster, pheatmap, dendextend

Maintainer: Minzhe Guo <[email protected]>

URL: https://github.com/minzheguo/SINCERA

BugReports: https://github.com/minzheguo/SINCERA/issues

Description: The pipeline

supports the analysis for: the distinction and identification

of major cell types; the identification of cell type specific

gene signatures; and the determination of driving forces of

given cell types.

License: GPL-3

LazyData: TRUE

Imports: e1071

RoxygenNote: 6.0.1

Collate:

'sincera.R'

'celltype.R'

'drivingforce.R'

'plotting.R'

'preprocessing.R'

'signature.R'