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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 70 33

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 128 28

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 31 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 107 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Dec 26, 2024
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 70 33 4 1 Updated Dec 23, 2024
  • cMDClick Public
    waldronlab/cMDClick’s past year of commit activity
    R 0 0 2 0 Updated Dec 23, 2024
  • BugSigDBEnrich Public

    A ShinyApp to perform enrichemnt analysis with BugSigDB signatures.

    waldronlab/BugSigDBEnrich’s past year of commit activity
    HTML 0 0 4 0 Updated Dec 21, 2024
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 31 13 4 0 Updated Dec 20, 2024
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 7 6 15 3 Updated Dec 18, 2024
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 2 0 4 (2 issues need help) 0 Updated Dec 17, 2024
  • TCGAutils Public

    Toolbox package for organizing and working with TCGA data

    waldronlab/TCGAutils’s past year of commit activity
    R 23 6 1 0 Updated Dec 16, 2024
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 51 5 9 1 Updated Dec 16, 2024
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 12, 2024
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