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@vanheeringen-lab

vanheeringen-lab

Repository of the group of Simon van Heeringen @ Radboud University

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  1. genomepy genomepy Public

    genes and genomes at your fingertips

    Python 383 38

  2. gimmemotifs gimmemotifs Public

    Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

    Python 113 34

  3. seq2science seq2science Public

    Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

    Python 156 27

  4. scepia scepia Public

    Single Cell Epigenome-based Inference of Activity

    Jupyter Notebook 19 2

  5. ANANSE ANANSE Public

    Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

    Python 79 16

Repositories

Showing 10 of 26 repositories
  • genomepy Public

    genes and genomes at your fingertips

    vanheeringen-lab/genomepy’s past year of commit activity
    Python 383 MIT 38 17 1 Updated Dec 18, 2024
  • GBD_data Public

    Datasets for the Genomics and Big Data course

    vanheeringen-lab/GBD_data’s past year of commit activity
    0 0 0 0 Updated Mar 19, 2024
  • ANANSE Public

    Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

    vanheeringen-lab/ANANSE’s past year of commit activity
    Python 79 MIT 16 26 2 Updated Mar 6, 2024
  • seq2science Public

    Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

    vanheeringen-lab/seq2science’s past year of commit activity
    Python 156 MIT 27 23 (1 issue needs help) 3 Updated Feb 5, 2024
  • gimmemotifs Public

    Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

    vanheeringen-lab/gimmemotifs’s past year of commit activity
    Python 113 MIT 34 54 4 Updated Dec 19, 2023
  • anansnake Public

    Automate long-running ANANSE analyses with snakemake

    vanheeringen-lab/anansnake’s past year of commit activity
    Python 1 Apache-2.0 1 2 1 Updated Nov 23, 2023
  • scepia Public

    Single Cell Epigenome-based Inference of Activity

    vanheeringen-lab/scepia’s past year of commit activity
    Jupyter Notebook 19 MIT 2 6 4 Updated Sep 27, 2023
  • vanheeringen-lab/phylotypic_hourglass’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 24, 2023
  • seq2science-FAQ Public Forked from vanheeringen-lab/seq2science

    Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

    vanheeringen-lab/seq2science-FAQ’s past year of commit activity
    Python 0 MIT 27 0 0 Updated Jun 22, 2023
  • GroupMeetings Public
    vanheeringen-lab/GroupMeetings’s past year of commit activity
    HTML 0 2 0 0 Updated Mar 3, 2023

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