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scanpy

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interactivereport / cellxgene_VIP

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

visualization svg scrna-seq publication-quality-plots seurat scanpy cellxgene cellxgene-vip

Updated Jun 21, 2024
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theislab / scanpy-demo-czbiohub

single-cell scanpy teaching

single-cell teaching-materials scanpy

Updated Nov 5, 2019
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becavin-lab / checkatlas

One liner tool to check the quality of your single-cell atlases.

python quality control multiqc single-cell seurat scanpy

Updated Apr 10, 2024
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poloarol / scrna-analysis-tutorials

scRNA Analysis tutorials

python bioinformatics r tutorials bioinformatics-pipeline transcriptomics bioinformatics-analysis single-cell-rna-seq seurat bulk-rna-seq scanpy scvi-tools

Updated Jan 23, 2023
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