Tools for analyzing changes in diversity across scales

Spatial analysis and simulation of ecological communities

R package for bootstrapping indices of bipartite ecological networks

q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

R package for building turnover saturation curves via bootstrapping

A small R script for generating pangenome accumulation curves

Evaluación del impacto del proceso de rarefacción en la detección de comunidades microbianas en datos de amplicones ARNr 16S

SaSii is a R script for estimating genetic parameters from genotypic data for inferring sample size effects on genetic analysis. Applications of this package include planning the number of samples necessary to obtain robust population genetic estimates and evaluating if obtained sample size is large enough.

R function that resamples randomly and without replacement counts, and calculates rarefied richness (N0), diversity (N1, N2) and evenness (N2/N0) (after Hill (1973) and Birks et al. (2016))

Analysis of existing line-point-intercept data to learn whether fewer samples can return similar results