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14 public repositories
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Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
Updated
Jun 14, 2024
Python
A Python package for microbiome sequencing analysis with QIIME 2
Updated
Jan 28, 2024
Python
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
Updated
Jan 20, 2024
Python
A Qiime plugin for MICOM.
Updated
Jul 25, 2024
Python
Effect size calculations for microbiome data
Updated
Apr 26, 2022
Python
QIIME2 plugin for PCA analysis of protein sequence phylogeny.
Updated
Jul 12, 2022
Python
Updated
Aug 13, 2024
Python
Updated
Jan 21, 2022
Python
🦠 SporeFlow: Fungal ITS metataxonomics pipeline
Updated
Jul 17, 2024
Python
Snakemake version of QIIME2
Updated
Apr 5, 2024
Python
Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
Updated
Jun 12, 2024
Python
q2-shared_asv is a QIIME 2 plugin for shared ASV analysis.
Updated
Sep 18, 2023
Python
QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
Updated
Aug 8, 2024
Python
16S procedure using Qiime2
Updated
Nov 8, 2022
Python
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