A collection of datasets and neural networks for microorganism image classification

De nove assembly and annotation of Fragilaria radians transcriptome

Code and plots for the paper of Jauss & Walden et al., 2020, https://www.frontiersin.org/articles/10.3389/fmicb.2020.592189/

This project aims to provide a comprehensive set of data and tools for ecological research, biodiversity analysis, and spatial studies for Fungi and Protists.

Which genomes are where in the big DBs?

An e-book about the evolution and diversity of microbial eukaryotes including fungi.

Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081

Contains scripts for biodiversity assessments of European lakes

Salinity as a driver of speciation in free-living dinoflagellates

Code and plots for the paper of Jauss & Nowack et al., 2021: https://doi.org/10.1016/j.ejop.2021.125805

Team Goop's 'Iron out the Kinks' Repo

data, code and results from Cerini F., O’Brien DA., Wolfe E., Besson M. and Clements CF. 2023. Phenotypic response to different predator strategies can be mediated by temperature: high-resolution data from protist microcosms.