Official git repository for Biopython (originally converted from CVS)

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Making Protein folding accessible to all!

Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Standardized data set for machine learning of protein structure

Foldseek enables fast and sensitive comparisons of large structure sets.

Working with molecular structures in pandas DataFrames

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Optimizing AlphaFold Training and Inference on GPU Clusters

Remote protein homology detection suite.

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

Get protein embeddings from protein sequences

Molecular simulation in Julia

An open-source platform for developing protein models beyond AlphaFold.

Saprot: Protein Language Model with Structural Alphabet (AA 3Di)

An all-atom protein structure dataset for machine learning.

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure