Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
-
Updated
Dec 22, 2024 - Python
#
pangenome-pipeline
Here are 6 public repositories matching this topic...
A toolkit for prokaryotic comparative genomics
-
Updated
Nov 15, 2024 - Python
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics annotation clustering biology gene-families bioinformatics-analysis proteome-clustering downstream-analysis orthomcl pangenome singletons plasmodium duplicates-removal gene-family binary-matrix accessory-genes coregenome pangenome-inference pangenome-pipeline count-matrix
-
Updated
Feb 21, 2022 - Python
single copy pangenome analysis from alignments to phylogenomics
bioinformatics genome-analysis bioinformatics-analysis pangenome pangenome-pipeline genome-analysis-annotation genome-pangenome
-
Updated
Sep 12, 2024 - Shell
Leveraging WES short reads for PAN-EXOME creation and analysis.
ngs exome-pipeline exome ngs-analysis exome-sequencing ngs-pipeline pangenome pangenomic-analysis pangenome-pipeline pangenome-graph
-
Updated
Nov 6, 2024 - WDL
Improve this page
Add a description, image, and links to the pangenome-pipeline topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the pangenome-pipeline topic, visit your repo's landing page and select "manage topics."