Streamlining phylogenomic data gathering, processing and visualization
-
Updated
Sep 26, 2018 - Python
#
orthologues
Here are 8 public repositories matching this topic...
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
bash r pipeline genomics perl phylogenetic-trees phylogenetics markers orthologues microbiology population-genetics codon-alignment maximum-likelihood phylogenomics species-trees recombination core-genome species-delimitation phylogenomics-pipeline clock-hypothesis
-
Updated
Aug 7, 2024 - Perl
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python shell bash data-science bioinformatics genetics biology ftp sge phylogenetics blast orthologues qsub orthology-inference ncbi sequence-alignment pbs orthologs orthology biosql
-
Updated
Dec 8, 2024 - Python
A couple of tools I find indispensable for post orthomcl down-stream analysis.
-
Updated
Oct 2, 2019 - Perl
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
science data-science bioinformatics pipeline genetics ngs bioinformatics-pipeline phylogenetics data-analysis orthologues phylogenomic transcriptome phylogenomics molecular-biology bioinformatics-analysis ngs-analysis taxonomic-classification phylogenomics-pipeline ngs-pipeline hybseq-data
-
Updated
Feb 16, 2024 - TeX
Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses
statistics prediction orthologues promoter transcription-factor-binding-site sigma-factor-binding-site dna-motifs rmes sigffrid bmc-bioinformatics two-box-motifs
-
Updated
Oct 6, 2020 - Perl
The local version of the RecBlast
-
Updated
Mar 4, 2017 - Python
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
biology open-data open-science orthologues phylogeny science-research protein-evolution open-notebook plant-genetic-resources plant-genomics
-
Updated
Oct 6, 2020 - Jupyter Notebook
Improve this page
Add a description, image, and links to the orthologues topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the orthologues topic, visit your repo's landing page and select "manage topics."