A Go package for engineering organisms.

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

3d engine implementation in DNA code!

Image-processing software for cryo-electron microscopy

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Package for processing and analyzing glycans and their role in biology.

A toolkit for painting agent-based mesoscale molecular simulations and illustrations.

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Multiview Intercellular SpaTial modeling framework

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

Read DNA sequences from colourful Microsoft Word documents

Course material for the Collaboratory Workshop "Machine Learning with Python"

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

A Go package for designing DNA.

Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data

🎨 Python library to plot multi-part genetic constructs

Disease pathways in the human interactome