nf-core / ampliseq Star 170 Code Issues Pull requests Amplicon sequencing analysis workflow using DADA2 and QIIME2 workflow pipeline nextflow metagenomics pacbio edna microbiome iontorrent illumina metabarcoding 16s rrna its 18s taxonomic-classification amplicon-sequencing qiime2 nf-core taxonomic-profiling Updated Aug 6, 2024 Nextflow
mazzalab-ieo / recallme Star 13 Code Issues Pull requests Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer bioinformatics genomics ngs vcf iontorrent Updated Dec 18, 2023 R
stevekm / reportIT Star 7 Code Issues Pull requests IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results pipeline analysis panel reporting genes iontorrent visualizations iontorrent-server igv Updated Oct 2, 2018 Python
iliapopov17 / The-shadow-of-HIV Star 3 Code Issues Pull requests 🦠Course project in Bioinformatics Institute 2023-2024 snakemake dna beta-diversity iontorrent hiv samtools bowtie2 relative-abundances alpha-diversity kraken2 differential-abundance-analysis maaslin2 Updated Aug 16, 2024 Jupyter Notebook
NYU-Molecular-Pathology / automation-scripts Star 0 Code Issues Pull requests repo for automation python/R scripts automation python-script iontorrent Updated Dec 9, 2022 Python
t-neumann / sff-adaptersplitter Star 0 Code Issues Pull requests Demultiplex 454 Genome Sequencer reads from a SFF file bioinformatics sequencing barcode computational-biology sff iontorrent de-multiplexing Updated Aug 1, 2016 C