📊 A universal enrichment tool for interpreting omics data
-
Updated
Nov 29, 2024 - R
#
gsea
Here are 68 public repositories matching this topic...
Gene Set Enrichment Analysis in Python
-
Updated
Dec 16, 2024 - Python
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gene-sets phosphoproteomics gsea pathway-enrichment-analysis ptm-sea ptm-signatures ptm-sites ksea ptm-enrichment-analysis
-
Updated
Oct 2, 2024 - R
Brings bulk and pseudobulk transcriptomics to the tidyverse
pipe tidy-data tidyverse pca bioconductor deseq2 entrez tidy transcripts transcriptomics tsne differential-expression edger redundancy gsea tibble gene-symbols bulk-transcriptional-analyses mds-dimensions ensembl-ids
-
Updated
Dec 13, 2024 - R
MSigDB gene sets for multiple organisms in a tidy data format
-
Updated
Dec 21, 2024 - R
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
workflow rna-seq pipeline nextflow shiny deseq2 microarray chip-seq atac-seq differential-expression limma gsea nf-core differential-abundance
-
Updated
Dec 24, 2024 - Nextflow
Lightweight Iterative Gene set Enrichment in R
-
Updated
Oct 3, 2024 - R
Enrichment Networks for Pathway Enrichment Analysis
-
Updated
Apr 14, 2023 - R
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
-
Updated
Oct 6, 2022 - C
Molecular Signatures Database (MSigDB) in a data frame
r genomics tidy-data tidyverse genes r-package geneset-enrichment msigdb geneontology gsea genesets reference-data genomics-data
-
Updated
Oct 4, 2024 - HTML
Gene Set Clustering based on Functional annotation
gene real-time cancer up-to-date gene-set-enrichment kegg-pathway enrichment-analysis geneontology gsea gene-set-clustering reactome-pathway functional-enrichment-analysis gene-set-analysis enrichment-testing download-pathways download-ontology functional-enrichment
-
Updated
May 3, 2024 - Perl
Julia implementation of the next generation GSEA 🏔️
cli bioinformatics gene julia computational-biology rna command-line-tool single-cell gene-set-enrichment msigdb command-line-interface gsea gene-set-analysis gene-set
-
Updated
Aug 26, 2024 - Julia
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
-
Updated
Jun 20, 2019
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
visualization bioinformatics r web-application shiny-apps geneset-enrichment kegg kegg-pathway gsea geneset-enrichment-analysis
-
Updated
Jan 27, 2020 - R
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
exploratory-data-analysis mesh principal-component-analysis gsea transferlearning bioconductor-package rna-sequencing-profiles
-
Updated
Nov 4, 2024 - R
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
bioinformatics gene-sets enrichment cuda pandas python3 transcriptomics gene-set-enrichment pathway-analysis gsea
-
Updated
Mar 31, 2023 - Python
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
-
Updated
Oct 8, 2024 - R
Flexible gene set enrichment analysis
-
Updated
Aug 30, 2021 - R
Function Enrichment analysis and Network construction
-
Updated
Oct 9, 2024 - R
Improve this page
Add a description, image, and links to the gsea topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the gsea topic, visit your repo's landing page and select "manage topics."