Version 5 of the CAFE phylogenetics software
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Nov 15, 2024 - C
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gene-family
Here are 4 public repositories matching this topic...
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
bioinformatics genomics comparative-genomics genera phylostratigraphy gene-family gene-age founder-gene founder-events
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Nov 29, 2024 - Shell
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
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Nov 24, 2020 - Julia
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics annotation clustering biology gene-families bioinformatics-analysis proteome-clustering downstream-analysis orthomcl pangenome singletons plasmodium duplicates-removal gene-family binary-matrix accessory-genes coregenome pangenome-inference pangenome-pipeline count-matrix
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Feb 21, 2022 - Python
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