Kalan-Lab / zol Star 45 Code Issues Pull requests zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.) bioinformatics genomics evolution detection metagenomics comparative-genomics phage gene-clusters bgc biosynthetic-gene-clusters mobile-genetic-elements Updated Aug 7, 2024 Python
casanova-lab / NHC Star 10 Code Issues Pull requests NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity genetics ngs gene-clusters cohort-analysis network-biology case-cohort Updated Feb 4, 2024 Python
Kalan-Lab / codoff Star 9 Code Issues Pull requests codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome. horizontal-gene-transfer phage gene-clusters codon-usage biosynthetic-gene-clusters mobile-genetic-elements Updated Jul 31, 2024 Python
alexandraseri / COGs-Fingerprints Star 0 Code Issues Pull requests redis bioinformatics gene-clusters Updated Aug 18, 2017 Python