A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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Nov 25, 2024 - Go
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fasta
Here are 408 public repositories matching this topic...
Versatile open-source tool for microbiome analysis
search bioinformatics clustering metagenomics chimera fasta microbiome fastq metabarcoding amplicon sequence-alignment
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Dec 25, 2024 - C
A Go package for engineering organisms.
go bioinformatics synthetic-biology computational-biology dna genbank alignment fasta molecular-biology mash synbio bioengineering primer-design golden-gate dna-barcode plasmids dna-barcoding codon-optimizer genetic-engineering sequence-hashing
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Oct 21, 2024 - Go
Renderers and renderer extensions for JupyterLab
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Dec 16, 2024 - HTML
SeqAn's official repository.
high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics suffixarray sequence-alignments seqan htslib sam-bam
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Dec 19, 2024 - C
The modern C library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics modern fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis cpp20 cpp-concepts
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Dec 21, 2024 - C
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
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Jul 7, 2023 - Python
Syntax highlighting for computational biology
syntax-highlighting vim less bioinformatics pdb sublime-text computational-biology gedit vcf fasta bam
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Mar 4, 2023 - Shell
Randomly subsample sequencing reads or alignments
rust coverage bioinformatics random alignment fasta bam fastq genome-analysis downsample subsampling
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Nov 29, 2024 - Rust
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
python bioinformatics jupyter anaconda simulation biology jupyter-notebook dna biopython genbank gel fasta jupyter-notebooks pydna gel-simulation gibson-assembly cloning-strategies gel-electrophoresis assembly-strategies
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Dec 23, 2024 - Jupyter Notebook
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
python bioinformatics pipeline genomics assembly docker-image polymorphic gap closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs
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Dec 15, 2023 - C
A robust and fast clustering method for amplicon-based studies
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Aug 26, 2024 - C
🚀 seqfu - Sequece Fastx Utilities
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Nov 15, 2024 - Nim
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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Nov 14, 2024 - Perl
Software for prediction of plasmid sequences in metagenomic assemblies
tensorflow prediction classification fasta plasmid metagenomes contigs metagenome plasmid-sequences metagenome-assembly plasmids plasflow
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Jun 28, 2021 - Python
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