Data Wrangling and Automated Reports from 'SIVIGILA' source

R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

R package with tools for estimating vaccine effectiveness and vaccine related metrics

R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

R package to clean and standardize epidemiological data

R package for handling linelist data

[No longer being developed. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models

An R package for importing epi data into R.

[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

An R package for simulating line lists

R-universe for the epiverse-trace GitHub organisation

Estimation of individual level variation in transmission

Software development blueprints for epiverse-trace

Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

Database of epidemiological parameters