ellipse and convex hull fitting package for stable isotope data

population and community dynamics on spatial graphs, in julia. (formerly EcoDynamics.jl)

Phylocom R interface

A spatially explicit trait- and individual-based microbial systems modelling framework

Hierarchical Model of Species Communities (HMSC) is an R package, which provides extensive set of analytical tools devised for numerical analysis of data on ecological communities or other similarly structured data. The methodological core of the HMSC approach is centered on combination of hierarchical regression and latent factor models.

A collection of functions to summarize the Portal Data

A Data Standard for Ecological Trait Datasets

Rossman S., Ostrom P.H., Gordon F., and Zipkin E.F. 2016. Beyond carbon and nitrogen: guidelines for estimating three‐dimensional isotopic niche space. Ecology and Evolution 6: 2405-2413.

M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.

Cohortz & Kohortz - Collaboration Portal

This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

hugo static site generator based site hosted on Netlify for Nederland Community Greenhouse project

Constellat.io

Code to make figures and certain analyses from "Source pool diversity and proximity shape the compositional uniqueness of insular mammal assemblages worldwide" (2021)

This repository contains data and code to reproduce analyses reported in the manuscript, "A keystone gene underlies the persistence of an experimental food web".

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

Making phylogenies for a list of fish species

Leverage the vegan packages in R to determine ecological community patterns, and conduct a non-metric multidimensional scaling approach to uncover mite community dynamics.

Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"