nf-core / scrnaseq Star 220 Code Issues Pull requests A single-cell RNAseq pipeline for 10X genomics data workflow rna-seq pipeline nextflow single-cell kallisto 10x-genomics 10xgenomics nf-core bustools alevin cellranger star-solo Updated Dec 20, 2024 Nextflow
pachterlab / kb_python Star 157 Code Issues Pull requests A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing scrna-seq kallisto single-cell-rna-seq rna-velocity-estimation bustools kb-python Updated Oct 21, 2024 Python
basilkhuder / Seurat-to-RNA-Velocity Star 133 Code Issues Pull requests A guide to using a Seurat object in conjunction with RNA Velocity kallisto seurat bustools anndata rna-velocity kb-python integrating-loom velocyto scvelo kallisto-bustools Updated Dec 25, 2021
pachterlab / kallistobustools Star 115 Code Issues Pull requests kallisto | bustools workflow for pre-processing single-cell RNA-seq data rna-seq single-cell kallisto bustools Updated Jun 19, 2022