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himashi92 / VT-UNet

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation

deep-learning pytorch mri transformer segmentation semantic-segmentation tumor-segmentation pytorch-implementation brats-dataset vision-transformer 3d-medical-imaging-segmentation volumetric-transformer pure-transformer vtunet

Updated Sep 11, 2023
Python

shalabh147 / Brain-Tumor-Segmentation-and-Survival-Prediction-using-Deep-Neural-Networks

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Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

deep-neural-networks deep-learning medical-imaging segmentation dice-scores keras-tensorflow survival-models dice-coefficient brain-tumor-segmentation unet-3d cnn-segmentation vnet3d survival-prediction glioma mri-segmentation dice-loss brats-dataset aiformedicine unet-architecture

Updated Jul 24, 2020
Jupyter Notebook

LightersWang / 3DUNet-BraTS-PyTorch

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PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)

pytorch segmentation unet semantic-segmentation brain-tumor-segmentation mri-segmentation brats-dataset brats-challenge brats2021 brain-tumors

Updated Nov 15, 2023
Python

HowieMa / lstm_multi_modal_UNet

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[ICIVC 2019] "LSTM multi-modal UNet for Brain Tumor Segmentation"

medical-imaging lstm-cnn unet-pytorch multi-modal-imaging brats-dataset

Updated Mar 14, 2020
Python

charan223 / Brain-Tumor-Segmentation-using-Topological-Loss

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A Tensorflow Implementation of Brain Tumor Segmentation using Topological Loss

deep-learning topology tensorflow cnn segmentation fcn image-segmentation 3d-segmentation topology-validation losses brats brain-tumor-segmentation niftynet brats-dataset

Updated Apr 17, 2019
Python

adhaka3 / Pyadiomics-based-glioma-grading

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This is a complete guide on how to do Pyradiomics based feature extraction and then, build a model to calculate the grade of glioma.

random-forest xgboost pca logistic-regression image-fusion relief mrmr pyradiomics k-best-first brats2018 radiomics-feature-extraction brats-dataset

Updated May 9, 2020
Jupyter Notebook

mahsaama / ViT3D-BrainTumorSegmentation

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Segmentation of Brain Tumors using Vision Transformer

transformers 3d attention-is-all-you-need brain-tumor-segmentation brats-dataset swin-transformer

Updated Feb 6, 2023
Python

Jun-Jie-Shi / M2FTrans

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[IEEE-JBHI'2024] M2FTrans: Modality-Masked Fusion Transformer for Incomplete Multi-Modality Brain Tumor Segmentation

transformer medical-image-segmentation pytorch-implementation brats-dataset missing-modalities

Updated Oct 6, 2024
Python

AHMEDSANA / Binary-Class-Brain-Tumor-Segmentation-Using-UNET

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We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for our segmentation.

python deep-learning tensorflow keras pandas python3 segmentation brain nueral-networks u-net tumor-detection brain-tumor-segmentation tumor-segmentation brats2018 brats18 brain-tumor-classification brats-dataset brain-tumor-detection u-net-keras

Updated Jan 9, 2023
Jupyter Notebook

PatrickSVM / Diffusion-Models-for-Brain-Tumor-MRI-Scans

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Training of Noise-to-Image Diffusion Model on Multi-Channel Brain Tumor MRI Scans.

image-generation brats-dataset diffusion-models brats2020

Updated Jan 12, 2023
Jupyter Notebook

blackbird71SR / Brain-Segmentation-and-Tumor-Detection

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Modified VGG16 and UNetCNN based 4D Image Segmentation (Finalist - Smart India Hackathon 2019)

python gui django deep-learning medical-imaging image-classification convolutional-neural-networks image-segmentation vgg16 unet mrbrains18 brats-dataset brats-challenge

Updated Aug 15, 2020
Python

FinnBehrendt / Conditioned-Diffusion-Models-UAD

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Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection

deep-learning unsupervised-learning anomaly-detection domain-adaptation mri-brain brats-dataset diffusion-models unsupervised-anomaly-detection conditioned-diffusion-models

Updated Nov 1, 2024
Python

tpopordanoska / calibration_and_bias

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Codebase for "On the relationship between calibrated predictors and unbiased volume estimation" (MICCAI 2021).

deep-learning medical-imaging calibration bias volume-estimation brats-dataset miccai-2021

Updated Aug 25, 2021
Python

HowieMa / BrainTumorSegmentation

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Brain tumor segmentation for Brats15 datasets

segmentation unet brats-dataset 3d-u

Updated Feb 19, 2019
Python

AHMEDSANA / Four-class-Brain-tumor-segmentation.

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We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.

python deep-learning tensorflow python3 mri-images brats brain-tumor-segmentation unet-image-segmentation unet-keras tumor-segmentation brats2018 mri-segmentation unet-segmentation brats-dataset brain-tumor-detection braintumorsegmentation

Updated Jan 19, 2023
Python

Dynamo13 / AW-Net

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[ICCVw 2023] "AW-Net: A Novel Fully Connected Attention-based Medical Image Segmentation Model" by Debojyoti Pal, Tanushree Meena, Dwarikanath Mahapatra, and Sudipta Roy.

computer-vision tensorflow medical-imaging iccv rsna multimodal-deep-learning segmentation-models brats-dataset iccv2023