Materials and presentation for the 2022 ISB Microbiome course.

Materials and presentation for the 2023 ISB Microbiome course.

A Qiime plugin for MICOM.

Quantitative metagenomic alignment and taxonomic exact-matching

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R

Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud

Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"

A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia

AU microbiome molecular exploratory analyses for NSW

VSEARCH pipeline for ASV inference of 16S seq data