Fixes CDS start and end for alternative reading frame

The last fix didn't correctly handle the negative strand.
tariqdaouda · Feb 20, 2018 · ae794eb · ae794eb
1 parent 4cdd6da
commit ae794eb
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/pyGeno/Transcript.py b/pyGeno/Transcript.py
@@ -117,7  117,11 @@ def setV(k, v) :
 
 				if len(cDNA) == 0 and e.frame != 0 :
 					e.CDS = e.CDS[e.frame:]
-					e.CDS_start  = e.frame
 
 					if e.strand == ' ':
 						e.CDS_start  = e.frame
 					else:
 						e.CDS_end -= e.frame
 
 				if len(e.CDS):
 					cDNA.append(''.join(e.CDS))