chore(main): release 8.27.1 (#3245)

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---


##
[8.27.1](v8.27.0...v8.27.1)
(2025-01-08)


### Documentation

* fix output name
([814ee4f](814ee4f))

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chore(main): release 8.27.0 (#3244)

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---


##
[8.27.0](v8.26.0...v8.27.0)
(2025-01-08)


### Features

* Add commentstring for vim plugin
([#3104](#3104))
([bd0d36e](bd0d36e))


### Documentation

* add examples for rule item access helpers and subpath
([a0cf5a1](a0cf5a1))

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chore(main): release 8.26.0 (#3229)

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---


##
[8.26.0](v8.25.5...v8.26.0)
(2024-12-23)


### Features

* add helpers for deferred input/output etc. item access
([#2927](#2927))
([2cca9bc](2cca9bc))


### Bug Fixes

* convert parameters so they can be serialized
([#2925](#2925))
([9e653fb](9e653fb))
* correct formatting of R preamble
([#2425](#2425))
([5380cae](5380cae))
* fix modification checks for scripts and and notebooks containing
wildcards or params in their paths
([#2751](#2751))
([773568d](773568d))
* Improved handling of missing output files in group job postprocessing,
accounting for temporary files.
([#1765](#1765))
([bac06ba](bac06ba))
* mtime of script or notebook not triggering workflow without metadata
([#3148](#3148))
([e8a0b83](e8a0b83))
* Pass `host` attribute to `GitlabFile` instantiation within class
methods ([#3155](#3155))
([9ef52de](9ef52de))
* problem with spaces in path
([#3236](#3236))
([2d08c63](2d08c63))
* require current yte release which contains an important bug fix for
cases where numpy/pandas data is passed to templates
([#3227](#3227))
([c3339da](c3339da))
* rerun jobs if previously failed but rule was changed afterwards
(thanks to [@laf070810](https://github.com/laf070810) for bringing this
up) ([#3237](#3237))
([1dc0084](1dc0084))
* use relpath for configfiles added to the source archive (thanks to
[@sposadac](https://github.com/sposadac) for the initial solution)
([#3240](#3240))
([bff3844](bff3844))

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chore(main): release 8.25.5 (#3223)

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---


##
[8.25.5](v8.25.4...v8.25.5)
(2024-11-29)


### Bug Fixes

* expand environment variables in --remote-job-local-storage-prefix
within the remote job, not the main snakemake job
([#3222](#3222))
([59c86a4](59c86a4))

---
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chore(main): release 8.25.4 (#3201)

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---


##
[8.25.4](v8.25.3...v8.25.4)
(2024-11-27)


### Bug Fixes

* clean env vars in apptainer
([#3199](#3199))
([76d5329](76d5329))
* ensure that intermediate files in job groups do not cause spurious
mtime errors when checking for consistency with output files
([#3220](#3220))
([4ba2bdf](4ba2bdf))
* Remove incomplete marker also when drop-metadata is active
([#3215](#3215))
([a4f2e5c](a4f2e5c))
* Remove incomplete marker for job finished only after metadata is
written ([#3197](#3197))
([6567e5f](6567e5f))
* Support versioned URLs in Asset class and fix missing versions in
Snakemake report
([#3203](#3203))
([f086f6c](f086f6c))
* update rust-script usage to recent version (v0.35.0)
[#3183](#3183)
([#3208](#3208))
([43885d7](43885d7))


### Documentation

* clarify continuously updated input section
([#3219](#3219))
([72a6994](72a6994))
* Fix typo in CHANGELOG.md
([#3198](#3198))
([0e445ed](0e445ed))
* refer to Merkle trees instead of "blockchain" in caching.rst
([#3216](#3216))
([282e5d9](282e5d9))
* remove twitter in favor of bluesky and mastodon
([#3217](#3217))
([231c6df](231c6df))
* use "dictionary" not "array" wording in config docs
([#3156](#3156))
([17aed41](17aed41))

---
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Please](https://github.com/googleapis/release-please). See
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chore(main): release 8.25.3 (#3196)

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---


##
[8.25.3](v8.25.2...v8.25.3)
(2024-11-11)


### Bug Fixes

* correctly set params in bash scripts
([#3188](#3188))
([07ddab5](07ddab5))
* more robust inference of source path that properly respects hosting
provider urls without loosing release or commit information
([#3195](#3195))
([bd8212b](bd8212b))
* When generating a DAG or HTML rulegraph, use consistent colours
([#3189](#3189))
([5f651d2](5f651d2))

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Please](https://github.com/googleapis/release-please). See
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chore(main): release 8.25.2 (#3185)

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---


##
[8.25.2](v8.25.1...v8.25.2)
(2024-11-05)


### Bug Fixes

* include conda pinnings, conda post deploy script, and env modules for
detection of software stack changes and corresponding rerun triggers
([#3184](#3184))
([2aeaa46](2aeaa46))

---
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Please](https://github.com/googleapis/release-please). See
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chore(main): release 8.25.1 (#3180)

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---


##
[8.25.1](v8.25.0...v8.25.1)
(2024-11-01)


### Bug Fixes

* ensure correct topological order when touching group job outputs
([#3181](#3181))
([5924a3e](5924a3e))
* ensure version agnostic robust pickling of pandas, polars and numpy
data structures passed as params to Python scripts or notebooks
([#3175](#3175))
([eb11137](eb11137))

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chore(main): release 8.25.0 (#3170)

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---


##
[8.25.0](v8.24.1...v8.25.0)
(2024-10-29)


### Features

* add first 5 rules to group name (used e.g. when naming cluster/cloud
jobs or logfiles)
([#3168](#3168))
([5657122](5657122))
* allow to mark input files of rules as ancient via the API or command
line interface (and thereby also via workflow specific profiles).
Putting this into a workflow specific profile (or specifying as
argument) allows to overrule rerun triggers caused by file modification
dates where the user knows better.
([#3171](#3171))
([6f3aed3](6f3aed3))


### Bug Fixes

* skip storage object when cloning flags for shadowed IO
([#3174](#3174))
([d733fed](d733fed))
* use permission safe copying when hidden conda files are already
present in a workdir. This avoids problems in case multiple people use
the same workdir and workflow.
([#3169](#3169))
([c98b2e7](c98b2e7))


### Documentation

* add tutorial references and small syntax fix
([#3172](#3172))
([6bee12a](6bee12a))

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chore(main): release 8.24.1 (#3166)

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---


##
[8.24.1](v8.24.0...v8.24.1)
(2024-10-23)


### Bug Fixes

* fix bug with --edit-notebook sessions causing output files marked as
incomplete, fix bug leading to missing log file after edit notebook
sessions ([#3162](#3162))
([19c6c0a](19c6c0a))
* proper error message if conda info fails
([#3157](#3157))
([4f99c20](4f99c20))

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