1 Release published by 1 person

• v8.26.0

  published Dec 23, 2024

12 Pull requests merged by 10 people

• chore(main): release 8.26.0

  #3229 merged Dec 23, 2024

• fix: use relpath for configfiles added to the source archive (thanks to @sposadac for the initial solution)

  #3240 merged Dec 23, 2024

• fix: Improved handling of missing output files in group job postprocessing, accounting for temporary files.

  #1765 merged Dec 21, 2024

• fix: Pass host attribute to GitlabFile instantiation within class methods

  #3155 merged Dec 21, 2024

• fix: fix modification checks for scripts and and notebooks containing wildcards or params in their paths

  #2751 merged Dec 21, 2024

• fix: correct formatting of R preamble

  #2425 merged Dec 21, 2024

• fix: convert parameters so they can be serialized

  #2925 merged Dec 21, 2024

• fix: rerun jobs if previously failed but rule was changed afterwards (thanks to @laf070810 for bringing this up)

  #3237 merged Dec 21, 2024

• fix: Cannot change working directory when R script hosted on GitHub with source

  #3164 merged Dec 21, 2024

• fix: mtime of script or notebook not triggering workflow without metadata

  #3148 merged Dec 21, 2024

• fix: problem with spaces in path

  #3236 merged Dec 21, 2024

• feat: add helpers for deferred input/output etc. item access

  #2927 merged Dec 21, 2024

3 Issues closed by 2 people

• The information of 'min threads' and 'max threads' do not shown in the Job stats panel.

  #2667 closed Dec 26, 2024

• Wildcards in script specifier not parsed when checking whether the output is older

  #2750 closed Dec 21, 2024

• "Snakefile not found" when path contains a space, using `run` directive

  #3235 closed Dec 21, 2024

1 Issue opened by 1 person

• More flexible graph display in Snakemake reports

  #3239 opened Dec 21, 2024

9 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• fix: parse_config yaml using safe loader with datetime handler

  #2993 commented on Dec 22, 2024 • 2 new comments

• fix: remove extra call to setup_logger()

  #2809 commented on Dec 21, 2024 • 1 new comment

• Consider supporting docker engine along with apptainer as --sdm option

  #3061 commented on Dec 20, 2024 • 0 new comments

• hisat2 aligned issue

  #3230 commented on Dec 20, 2024 • 0 new comments

• conda info --json returned non-zero exit status 127

  #3202 commented on Dec 21, 2024 • 0 new comments

• slurm executor not printing logs on fail

  #2911 commented on Dec 23, 2024 • 0 new comments

• Handle GPU ids

  #281 commented on Dec 23, 2024 • 0 new comments

• The priority directive should support lambdas

  #2994 commented on Dec 24, 2024 • 0 new comments

• fix: checkpoints inside modules are overwritten

  #2843 commented on Dec 21, 2024 • 0 new comments