% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/polya_plots.R

\name{plot_polya_distribution}

\alias{plot_polya_distribution}

\title{Plots polya distribution as ndensity plot}

\usage{

plot_polya_distribution(

polya_data,

groupingFactor = NA,

parameter_to_plot = "polya_length",

condition1 = NA,

condition2 = NA,

show_center_values = "none",

subsample = NA,

ndensity = TRUE,

mode_method = "density",

auto_scale = T,

transcript_id = NULL,

transcript_id_column = "transcript",

...

)

}

\arguments{

\item{polya_data}{input data with polyA predictions}

\item{groupingFactor}{how to group}

\item{parameter_to_plot}{what to plot on x scale (defaults to polya_length)}

\item{condition1}{First condition to include on the plot}

\item{condition2}{Second condition to include on the plot}

\item{show_center_values}{Show center values as vertical line. Possible values: "none","median","mean"}

\item{subsample}{Subsample input table, provide either absolute number or fraction}

\item{ndensity}{Should ndensity (scaled density) be plotted instead of normal denisty (default = TRUE)}

\item{mode_method}{method used for the mode calculation (argument to modeest::mlv method parameter)}

\item{auto_scale}{automatically adjust axis scales (default=TRUE)}

\item{...}{parameters passed to .basic_aesthetics function (scale_x_limit_low = NA, scale_x_limit_high = NA, scale_y_limit_low = NA, scale_y_limit_high = NA, color_palette = "Set1",plot_title=NA)}

}

\value{

\link[ggplot2]{ggplot} object

}

\description{

Plots polya distribution as ndensity plot

}