Annotation of filaments and other curvilinear structures in 3D.

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

An R package that helps scaffolding extendr-enabled packages or compiling Rust code dynamically

Python pathlib-style classes for cloud storage services such as Amazon S3, Azure Blob Storage, and Google Cloud Storage.

WebAssembly powered code blocks and exercises for both the R and Python languages in Quarto documents

Python Classes Without Boilerplate

Control JupyterLab from Python Notebooks with Jupyter Widgets 🧪 ☢️ 🐍

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

The xkcd font

Utilities to execute code blocks in Markdown files.

Use PyScript in mkdocs

Comparative Connectomics of Public and In Progress Drosophila Datasets

Mesh optimization library that makes meshes smaller and faster to render

Python implementation of HlibertSort for sorting 3D point clouds using space-filling curves

A Medical Visualisation Add-On for Blender

A Python Interpreter written in Rust

Trace, the New AutoDiff for AI Systems and LLM Agents

A connectome constrained deep mechanistic network (DMN) model of the fruit fly visual system

PYthon Neural Analysis Package 🍍

Geometry processing library in pure rust

Official code for the paper Coverage Axis: Inner Point Selection for 3D Shape Skeletonization, Eurographics 2022.

A central repository to keep track of the status of work on and support for free-threaded CPython (see PEP 703), with a focus on the scientific and ML/AI ecosystem

Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"

Mitsuba 3: A Retargetable Forward and Inverse Renderer

Pytorch implementation of DiffusionNet for fast and robust learning on 3D surfaces like meshes or point clouds.

Bayesian Modeling and Probabilistic Programming in Python

A python library for link prediction in social networks