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Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.
MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques
A modern resume template written in Typst, inspired by Awesome-CV
MAGinator - Accurate SNV calling and profiling of MAGs
A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
Positron, a next-generation data science IDE
Python3 wrapper for parallelized gene prediction using Prodigal
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also…
R package for distilling functional annotations of bacterial genomes and metagenomes
alignment-free coverage calculation for metagenomic binning >100 times faster
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
Count Regression for Correlated Observations with the Beta-binomial
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Genomic language model predicts protein co-regulation and function
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
Gene tree - species tree reconciliation from gene tree distributions
Pipeline for identification of eukaryotic contigs in metagenomic assemblies
This repository releases the model weights of ANNA16, an end-to-end, web-based tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequence.