The aim of this R code bundle is to reproduce the hypothesis-generating data analyses in the original research article by Ma, Karthik, Lövrot, et al. J Natl Cancer Inst. 2017.
Preparations (GSEA resources, etc.) to be added.
- Run src/cache-objects.R
- Run src/perform-de-gsea.R
- Knit reports/reproduce-ma17jnci.Rmd
A generated report can be viewed at lovrot.github.io/reproduce-ma17jnci/.
Ma R, Karthik GM, Lövrot J, Haglund F, Rosin G, Katchy A, Zhang X, Viberg L, Frisell J, Williams C, Linder S, Fredriksson I, Hartman J. Estrogen receptor β as a potential target in breast cancer stem cells. J Natl Cancer Inst 109(3):1-14, 2017. doi:10.1093/jnci/djw236. pmid:28376210.
Copyright (c) 2017 John Lövrot.
This work is licensed under a Creative Commons Attribution 4.0 International License.