Updating README.md

jackwadden · May 12, 2021 · 6697a7f · 6697a7f
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@@ -26,9  26,10 @@ LAMPrey currently relies heavily on the ```swalign``` library. This library is a
 
 ## Quick Start
 
-An example run script is provided to help users get started and play with various options.
 An example run script is provided to help users get started and play with various options. To work, LAMPrey needs the human reference (ideally pre-indexed using minimap2). The example scripts use the HG19 assembly, which can be [downloaded here](https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz).
 
 ```
-$ scripts/run_h3.3.sh <reference_minimap_idx> <fastq>
 $ scripts/run_h3.3.sh <hg19_ref>.fa.idx <fastq>
 ```
 ## General LAMPrey Usage