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✂️ ⚡ Rapid haploid variant calling and core genome alignment
Identify short variants and structural variants from raw sequencing data or genomic sequences
Structural variation caller using third generation sequencing
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…
Systematic search of all known anti-phage systems.
MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
Bioinformatic Tools for study Evolution of metabolic diversity
TerminalTextEffects (TTE) is a terminal visual effects engine, application, and Python library.
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API
You like pytorch? You like micrograd? You love tinygrad! ❤️
turnkey self-hosted offline transcription and diarization service with llm summary
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
Similarity networks of biosynthetic gene clusters
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
🧬 gget enables efficient querying of genomic reference databases
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
Powerful Slack CLI via pure bash. Rich messaging, uploads, posts, piping, oh my!
Respository for Open-Science modular microscope system.
Sequence correction provided by ONT Research
A bioinformatics tool for working with modified bases
Methylation/modified base calling separated from basecalling.