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Commits on Jul 19, 2022

• novel fams

  Cantalapiedra

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  f349b35

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Commits on Feb 16, 2022

• resume

  Cantalapiedra

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  b976f31

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• resume

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  0613295

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• resume

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  0d7ea3d

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• blastx gff

  Cantalapiedra

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  6d6ce97

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• blastx gff

  Cantalapiedra

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  c3246f6

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• blastx gff

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  4cca21b

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• blastx gff

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  d400f19

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• blastx gff

  Cantalapiedra

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  830b4fe

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Commits on Oct 26, 2021

• seed ortholog in orthologs report, update tests

  Cantalapiedra

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  1fce23a

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Commits on Oct 15, 2021

• seed ortholog in orthologs report, update tests

  Cantalapiedra

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  ffd7a83

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Commits on Oct 6, 2021

• update unit tests

  Cantalapiedra

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  4a1a33d

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• update unit tests

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  e71876a

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Commits on Aug 12, 2021

• diamond 2.0.11 --iterate --fast --default

  Cantalapiedra

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  165d1f3

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Commits on Jun 24, 2021

• consider . in scores when sorting. fix #319

  Cantalapiedra

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  4008bc3

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Commits on Jun 8, 2021

• add diamond frameshift option

  Cantalapiedra

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  a37285b

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Commits on May 28, 2021

• PFAM transfer FPs recalibration

  Cantalapiedra

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  ccd9f7f

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Commits on May 20, 2021

• test also seed without annotation

  Cantalapiedra

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  7129622

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• fix #301

  Cantalapiedra

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  00b9616

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Commits on Apr 8, 2021

• new annotations file format

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  18854ab

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Commits on Mar 19, 2021

• --allow_overlaps, --overlap_tol

  Cantalapiedra

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  6398a50

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Commits on Mar 5, 2021

• resume annotations

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  e21b631

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Commits on Mar 2, 2021

• pipeline of generators / tests passed

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  7af76cf

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Commits on Feb 26, 2021

• friday night commit: no pfam transfer, new tax scope modes

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  9726386

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Commits on Feb 25, 2021

• tax_scopes package

  Cantalapiedra

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  ea36e94

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Commits on Feb 24, 2021

• tax scope files

  Cantalapiedra

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  fd57acb

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• hmmer set start multiproc spawn

  Cantalapiedra

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  f5cc284

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Commits on Feb 23, 2021

• sqlite single proteins table

  Cantalapiedra

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  d5637fc

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Commits on Feb 22, 2021

• minor tests change

  Cantalapiedra

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  d2cb75b

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• decorate existing GFF file

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  cb5d626

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Commits on Feb 21, 2021

• first GFF decoration commit

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  cdacdba

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Commits on Feb 18, 2021

• add target coverage to gff

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  dbf32d8

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• mmseqs tests

  Cantalapiedra

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  cb1b9b8

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• trans_table are applied to diamond and mmseqs also

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  a335a9e

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• mmseqs outputs qcov scov

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  bdd5750

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