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The HTML Presentation Framework

JavaScript 67,847 16,639 Updated Oct 29, 2024

Bayesian Modeling and Probabilistic Programming in Python

Python 8,700 2,008 Updated Oct 30, 2024

Interactive assembly and analysis of RAD-seq data sets

Jupyter Notebook 72 40 Updated Sep 23, 2024

The remote Jupyter kernel/kernels administration utility

Python 54 18 Updated Oct 3, 2016

Creates temporary Jupyter Notebook servers using Docker containers. [DEPRECATED - See BinderHub project]

JavaScript 528 122 Updated Jan 24, 2018

A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution

Python 29 8 Updated Sep 9, 2024

IPython Parallel: Interactive Parallel Computing in Python

Jupyter Notebook 2,590 1,003 Updated Oct 30, 2024

A template for Python Projects. INSERT TAGLINE HERE.™

Python 170 31 Updated Jan 1, 2023

IPython tool to report memory usage deltas for every command you type

Jupyter Notebook 367 58 Updated Apr 17, 2024

A collection of shell and perl scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in MrBayes posteriors.

Perl 6 3 Updated Apr 1, 2015

rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.

C 9 7 Updated Jan 2, 2024

Python framework for phylogenetic tree landscapes

Python 20 1 Updated Jan 19, 2016

Python wrapper for the phylogenetic likelihood library (PLL), from the Exelixis lab. Of RAxML fame.

C 4 2 Updated Jan 17, 2017

CARTO Python client

Python 154 62 Updated Aug 12, 2021

Emacs Pro Essentials brings the most common emacs features and key bindings that you love to Sublime Text. The kill and mark rings, i-search, registers, numeric arguments, and cursor motion command…

Python 569 66 Updated Oct 25, 2020

Make some beautiful corner plots

Python 514 228 Updated Oct 10, 2024

DPPDIV

C 12 1 Updated Apr 10, 2020

Python interface for igraph

Python 1,303 249 Updated Oct 29, 2024

Accurate Species TRee ALgorithm

Java 241 68 Updated Apr 1, 2024

A Pelican port of Jekyll's Lanyon Theme

HTML 50 17 Updated Feb 19, 2017

Versatile open-source tool for microbiome analysis

C 662 123 Updated Oct 24, 2024

Interactive Data Visualization in the browser, from Python

TypeScript 19,329 4,182 Updated Oct 31, 2024

Color palettes for Python

Python 772 73 Updated May 22, 2024

bayesian-cov-estimation

Python 1 Updated Nov 22, 2013