GitHub - dereneaton/RADmissing: Analysis of missing data in simulated and empirical RAD data sets.

RADmissing

Analysis of missing data in simulated and empirical RAD data sets.

I. Simulation of RAD-seq data and analysis of missing data

II. Assembly of 10 empirical RAD-seq data sets

III. Model fitting to predict missing data

IV. Measuring hierarchical redundancy

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
LICENSE		LICENSE
README.md		README.md
emp_and_sims_nb_pgls.ipynb		emp_and_sims_nb_pgls.ipynb
emp_nb_Barnacles.ipynb		emp_nb_Barnacles.ipynb
emp_nb_Danio.ipynb		emp_nb_Danio.ipynb
emp_nb_Finches.ipynb		emp_nb_Finches.ipynb
emp_nb_Heliconius.ipynb		emp_nb_Heliconius.ipynb
emp_nb_Ohomopterus.ipynb		emp_nb_Ohomopterus.ipynb
emp_nb_Orestias.ipynb		emp_nb_Orestias.ipynb
emp_nb_Pedicularis.ipynb		emp_nb_Pedicularis.ipynb
emp_nb_Phrynosomatidae.ipynb		emp_nb_Phrynosomatidae.ipynb
emp_nb_Quercus.ipynb		emp_nb_Quercus.ipynb
emp_nb_Viburnum.ipynb		emp_nb_Viburnum.ipynb
emp_nb_measure_hierarchical.ipynb		emp_nb_measure_hierarchical.ipynb
empirical_10_SraRunTable.txt		empirical_10_SraRunTable.txt
empirical_2_SraRunTable.txt		empirical_2_SraRunTable.txt
empirical_3_SraRunTable.txt		empirical_3_SraRunTable.txt
empirical_6_SraRunTable.txt		empirical_6_SraRunTable.txt
empirical_7_SraRunTable.txt		empirical_7_SraRunTable.txt
empirical_8_SraRunTable.txt		empirical_8_SraRunTable.txt
empirical_9_EraRunTable.txt		empirical_9_EraRunTable.txt
empirical_9_flycatchers_SraRunTable.txt		empirical_9_flycatchers_SraRunTable.txt
old_sim_nb.ipynb		old_sim_nb.ipynb
sims_nb_simulations.ipynb		sims_nb_simulations.ipynb