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Benjamin Stévens edited this page Apr 24, 2014
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Welcome to the IMS wiki!
| Format name | Vendor | Extension | Multiple files | Tool use to read | Converted |
|---|---|---|---|---|---|
| JPEG | N.A. | jpg, jpeg | NO | Image Magick VIPS | YES |
| PNG | N.A. | png | NO | Image Magick VIPS | YES |
| TIFF | N.A. | tiff, tif | NO | Image Magick VIPS | YES |
| BMP | N.A. | bmp | NO | Image Magick VIPS | YES |
| PGM | N.A. | pgm | NO | Image Magick VIPS | YES |
| VMS | Hamamatsu | vms | YES | Openslide | NO |
| NDPI | Hamamatsu | ndpi | NO | Openslide | NO |
| SVS | Aperio | svs | NO | Openslide | NO |
| SVSLIDE | Sakura | svslide | NO | Openslide | NO |
| MRXS | Mirax | mrxs | YES | Openslide | NO |
| SCN | Leica | scn | NO | Openslide | NO |
| Roche TIFF | Roche | tiff | NO | Image Magick VIPS | YES |
- DICOM (part 145)
- Zeiss ZVI
- Philipps (extension ?)
Note :
- If a image is composed of multiple files, they must be zipped before the upload. One image per zip.
- A zip may contains multiple image which are composed of single files
Process :
- File is uploaded to NGINX the passed to IMS upload service.
- For each image uploaded, IMS create an instance of UploadedImage which contains some informations (the path of the files, the target storages, the user, ...).
- A service check the format of the UploadedFile.
- The service copy all the file into the right storage directory.
- If this is an archive file (like ZIP), the service unzip all the files and return an array of UploadedFile.
- If the image format require a conversion to be compatible with IIP Image Server, the service convert the file, create a new UploadedFile instance an return it.
- Finally, the service create an AbstractImage into the Cytomine database, with the final UploadedFile instance.