db_file: "data/scanb.sqlite"

app_title: "SCAN-B MutationExplorer"

gene_protein_map_file: "data/gene_uniprot_mapping.tsv"

table_header: "## Downloaded from: http://oncogenomics.bmc.lu.se/MutationExplorer\n## If you use this data in your research, please cite the following publication:\n## Brueffer et al (2020). The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome. EMBO Molecular Medicine, 12(10):e12118.\n##\n"

custom_genes:

esr1_resistance:

column: "mut.status.ESR1.resistance"

label: "ESR1 Resistance (Dahlgren et al, 2021)"

pten_mutexp:

column: "pten.mutexp"

label: "PTEN Mutation and Gene Expression (Brueffer et al, 2020)"

status:

- "low"

- "normal"

pten_exp:

column: "pten.exp"

label: "PTEN Gene Expression (Brueffer et al, 2020)"

status:

- "low"

- "normal"